Mm_17.7z May 2026

Software for motif discovery and next generation sequencing analysis

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and ChIP-Seq analysis. It is a collection of command line programs for unix-style operating systems written in mostly perl and c++. Homer was primarily written as a de novo motif discovery algorithm that is well suited for finding 8-12 bp motifs in large scale genomics data.

Hardware Requirements (recommended): 2+ Gb memory (4-8+ Gb), 10+ Gb Hard Drive space (50+ Gb)
Software Requirements: Unix compatible OS (or cygwin), perl, gcc, make, wget (optional for full functionality: R, DESeq2, blat, bedGraphToBigWig, liftOver)
License: GPLv3

HOMER works on pretty much any Linux/UNIX systems, including MacOS (if Xcode compilers are installed) and on Windows using either cygwin or a Linux subsystem.

If you are looking specifically for HOMER2, you are in the right place! HOMER2 is integrated into HOMER.

Full Program Download

Use 7-Zip or WinRAR to inspect the headers without fully extracting.

If you are unsure of the origin, do not extract the file. Instead, upload the file (or its hash) to VirusTotal to check for malicious payloads.

It might contain version 17 of a specific mod pack (e.g., for games like Skyrim or Minecraft ), a collection of assets for a "Magic Mirror" smart project, or a specific firmware build.

Program Components and Older Versions

Mm_17.7z May 2026

Use 7-Zip or WinRAR to inspect the headers without fully extracting.

If you are unsure of the origin, do not extract the file. Instead, upload the file (or its hash) to VirusTotal to check for malicious payloads.

It might contain version 17 of a specific mod pack (e.g., for games like Skyrim or Minecraft ), a collection of assets for a "Magic Mirror" smart project, or a specific firmware build.

Update Information

Change Log - Short description of recent changes

update.txt - Current HOMER configuration list (Currently support human hg17/hg18/hg19, mouse mm8/mm9, rat rn4, X. tropicalis xenTro2, drosophila dm3, and C. elegans ce6, Zebrafish danRer7, yeast sacCer2, Arabidopsis tair10, Rice msu6, Pombe ASM294v1)

Can't figure something out? Questions, comments, concerns, or other feedback:
cbenner@ucsd.edu